[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 103 items for (author: stephan & nc)

EMDB-43629:
Cryo-EM structure of phage DEV ejection proteins gp72:gp73
Method: single particle / : Iglesias SM, Cingolani G

PDB-8vxq:
Cryo-EM structure of phage DEV ejection proteins gp72:gp73
Method: single particle / : Iglesias SM, Cingolani G

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-28910:
Glycan-Base ConC Env Trimer
Method: single particle / : Olia AS, Kwong PD

PDB-8f7t:
Glycan-Base ConC Env Trimer
Method: single particle / : Olia AS, Kwong PD

EMDB-26653:
Native Lassa glycoprotein in complex with neutralizing antibodies 8.9F and 37.2D
Method: single particle / : Li H, Saphire EO

EMDB-26655:
Native Lassa glycoprotein in complex with neutralizing antibodies 12.1F and 37.2D
Method: single particle / : Li H, Saphire EO

PDB-7uot:
Native Lassa glycoprotein in complex with neutralizing antibodies 8.9F and 37.2D
Method: single particle / : Li H, Saphire EO

PDB-7uov:
Native Lassa glycoprotein in complex with neutralizing antibodies 12.1F and 37.2D
Method: single particle / : Li H, Saphire EO

EMDB-25100:
Unmethylated Mtb Ribosome 50S with SEQ-9
Method: single particle / : Xing Z, Cui Z, Zhang J, TB Structural Genomics Consortium (TBSGC)

PDB-7sfr:
Unmethylated Mtb Ribosome 50S with SEQ-9
Method: single particle / : Xing Z, Cui Z, Zhang J, TB Structural Genomics Consortium (TBSGC)

EMDB-27617:
Helical reconstruction of A92E HIV capsid in complex with CPSF6 construct (filtered by local resolution)
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27619:
Helical reconstruction of A92E HIV capsid in complex with CPSF6 construct (filtered by local resolution)
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-27625:
Helical reconstruction of A92E HIV capsid in presence of FG mutant CPSF6 construct (filtered by local resolution)
Method: helical / : Iqbal N, Asturias F, Kvaratskhelia M

EMDB-26458:
Structure of lineage I (Pinneo) Lassa virus glycoprotein bound to Fab 25.10C
Method: single particle / : Buck TK, Enriquez AE, Hastie KM

EMDB-26594:
Lineage I (Pinneo) Lassa virus glycoprotein bound to 18.5C-M30 Fab
Method: single particle / : Buck TK, Enriquez AS, Hastie KM

PDB-7uds:
Structure of lineage I (Pinneo) Lassa virus glycoprotein bound to Fab 25.10C
Method: single particle / : Buck TK, Enriquez AE, Hastie KM

PDB-7ul7:
Lineage I (Pinneo) Lassa virus glycoprotein bound to 18.5C-M30 Fab
Method: single particle / : Buck TK, Enriquez AS, Hastie KM

EMDB-26195:
Structure of Lassa Virus glycoprotein (Josiah) bound to Fab 25.10C
Method: single particle / : Enriquez AS, Hastie KM

PDB-7tyv:
Structure of Lassa Virus glycoprotein (Josiah) bound to Fab 25.10C
Method: single particle / : Enriquez AS, Hastie KM

EMDB-12990:
Cryo-EM structure of N. gonorhoeae LptDE in complex with ProMacrobodies
Method: single particle / : Botte M, Ni D, Schenck S, Zimmermann I, Chami M, Bocquet N, Egloff P, Bucher D, Trabuco M, Cheng RKY, Brunner JD, Seeger MA, Stahlberg H, Hennig M

PDB-7omm:
Cryo-EM structure of N. gonorhoeae LptDE in complex with ProMacrobodies (MBPs have not been built de novo)
Method: single particle / : Botte M, Ni D, Schenck S, Zimmermann I, Chami M, Bocquet N, Egloff P, Bucher D, Trabuco M, Cheng RKY, Brunner JD, Seeger MA, Stahlberg H, Hennig M

EMDB-25794:
Cryo-EM structure of SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-61.1
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

EMDB-25797:
Locally refined region of SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-61.1
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

EMDB-25806:
Locally refined region of SARS-CoV-2 spike in complex with antibody A19-46.1
Method: single particle / : Zhou T, Kwong PD

EMDB-25807:
Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibody A19-46.1
Method: single particle / : Zhou T, Kwong PD

EMDB-25808:
Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibodies A19-46.1 and B1-182.1
Method: single particle / : Zhou T, Kwong PD

EMDB-26256:
Local refinement of cryo-EM structure of the interface of the Omicron RBD in complex with antibodies B-182.1 and A19-46.1
Method: single particle / : Zhou T, kwong PD

PDB-7tb8:
Cryo-EM structure of SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-61.1
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

PDB-7tbf:
Locally refined region of SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-61.1
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

PDB-7tc9:
Locally refined region of SARS-CoV-2 spike in complex with antibody A19-46.1
Method: single particle / : Zhou T, Kwong PD

PDB-7tca:
Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibody A19-46.1
Method: single particle / : Zhou T, Kwong PD

PDB-7tcc:
Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibodies A19-46.1 and B1-182.1
Method: single particle / : Zhou T, Kwong PD

PDB-7u0d:
Local refinement of cryo-EM structure of the interface of the Omicron RBD in complex with antibodies B-182.1 and A19-46.1
Method: single particle / : Zhou T, kwong PD

EMDB-23480:
Cryo-EM structure of llama J3 VHH antibody in complex with HIV-1 Env BG505 DS-SOSIP.664
Method: single particle / : Gorman J, Kwong PD

PDB-7lpn:
Cryo-EM structure of llama J3 VHH antibody in complex with HIV-1 Env BG505 DS-SOSIP.664
Method: single particle / : Gorman J, Kwong PD

EMDB-22865:
CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
Method: single particle / : Cui Z, Zhang J

PDB-7kgb:
CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
Method: single particle / : Cui Z, Zhang J

EMDB-23662:
Complex of SARS-CoV-2 receptor binding domain with the Fab fragments of neutralizing antibodies REGN10985 and REGN10989
Method: single particle / : Zhou Y, Romero Hernandez A, Saotome K, Franklin MC

PDB-7m42:
Complex of SARS-CoV-2 receptor binding domain with the Fab fragments of neutralizing antibodies REGN10985 and REGN10989
Method: single particle / : Zhou Y, Romero Hernandez A, Saotome K, Franklin MC

EMDB-12746:
Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist
Method: single particle / : Isaikina P, Tsai CJ, Dietz NB, Pamula F, Goldie KN, Schertler GFX, Maier T, Stahlberg H, Deupi X, Grzesiek S

PDB-7o7f:
Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist
Method: single particle / : Isaikina P, Tsai CJ, Dietz NB, Pamula F, Goldie KN, Schertler GFX, Maier T, Stahlberg H, Deupi X, Grzesiek S

EMDB-12736:
Ribosomal methyltransferase KsgA bound to small ribosomal subunit
Method: single particle / : Stephan NC, Ries AB, Boehringer D, Ban N

EMDB-23494:
Cryo-EM of the SLFN12-PDE3A complex: PDE3A body refinement
Method: single particle / : Fuller JR, Garvie CW, Lemke CT

EMDB-23495:
Cryo-EM of the SLFN12-PDE3A complex: Consensus subset model
Method: single particle / : Fuller JR, Garvie CW, Lemke CT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more